graph.outliers.spp: Pass the output of extract.growth with every individual's...

In forestgeo/ctfs: Tools for the Analysis of Forest Dynamics

Description

Pass the output of extract.growth with every individual's growth (full), and another after outliers have been trimmed. This finds the records trimmed and overlays them on the entire graph. If a model is submitted, then the curves are graphed too.

Usage

graph.outliers.spp(full, trimmed, spname = "gustsu", fit = NULL,
  size = "agb", export = NULL, xtitle = "log(agb)",
  ytitle = "growth")

Arguments

fit	A fitted model.

Examples

## Not run: 
full = extract.growthdata(
  census1 = bciex::bci12t5mini,
  census2 = bciex::bci12t6mini,
  growcol = 'incgr',
  growthfunc = growth.biomass.indiv,
  logit = 'x',
  rounddown = FALSE,
  mindbh = 100,
  dbhunit = 'mm',
  err.limit = 4000,
  maxgrow = 7500
)
trimmed = extract.growthdata(
  census1 = bciex::bci12t5mini,
  census2 = bciex::bci12t6mini,
  growcol = 'incgr',
  growthfunc = growth.biomass.indiv,
  logit = 'x',
  rounddown = FALSE,
  mindbh = 100,
  dbhunit = 'mm',
  err.limit = 4,
  maxgrow = 75
)

## End(Not run)

forestgeo/ctfs documentation built on May 3, 2019, 6:44 p.m.