Files in fosterlab/PrInCE

Predicting Interactomes from Co-Elution

R/PrInCE.R R/adjacency_matrix_from_data_frame.R R/adjacency_matrix_from_list.R R/build_gaussians.R R/calculate_autocorrelation.R R/calculate_features.R R/calculate_precision.R R/check_gaussians.R R/choose_gaussians.R R/clean_profile.R R/clean_profiles.R R/co_apex.R R/concatenate_features.R R/detect_complexes.R R/filter_profiles.R R/fit_curve.R R/fit_gaussians.R R/gaussian_aic.R R/gold_standard.R R/impute_neighbors.R R/is_unweighted.R R/is_weighted.R R/kristensen.R R/kristensen_gaussians.R R/make_feature_from_data_frame.R R/make_feature_from_expression.R R/make_initial_conditions.R R/make_labels.R R/match_matrix_dimensions.R R/predict_ensemble.R R/predict_interactions.R R/replace_missing_data.R R/scott.R R/scott_gaussians.R R/threshold_precision.R README.md data-raw/README.md data-raw/preprocess-EBI-Complex-Portal.R data-raw/preprocess-Kristensen-NatMeth-2012-gaussians.R data-raw/preprocess-Kristensen-NatMeth-2012.R data-raw/preprocess-Scott-MSB-2017-gaussians.R data-raw/preprocess-Scott-MSB-2017.R man/PrInCE.Rd man/adjacency_matrix_from_data_frame.Rd man/adjacency_matrix_from_list.Rd man/aic.Rd man/build_gaussians.Rd man/calculate_autocorrelation.Rd man/calculate_features.Rd man/calculate_precision.Rd man/check_gaussians.Rd man/choose_gaussians.Rd man/clean_profile.Rd man/clean_profiles.Rd man/co_apex.Rd man/concatenate_features.Rd man/detect_complexes.Rd man/filter_profiles.Rd man/fit_curve.Rd man/fit_gaussians.Rd man/gold_standard.Rd man/impute_neighbors.Rd man/is_unweighted.Rd man/is_weighted.Rd man/kristensen.Rd man/kristensen_gaussians.Rd man/make_feature_from_data_frame.Rd man/make_feature_from_expression.Rd man/make_initial_conditions.Rd man/make_labels.Rd man/match_matrix_dimensions.Rd man/predict_ensemble.Rd man/predict_interactions.Rd man/replace_missing_data.Rd man/scott.Rd man/scott_gaussians.Rd man/threshold_precision.Rd vignettes/intro-to-prince.Rmd