data-raw/README.md
In fosterlab/PrInCE: Predicting Interactomes from Co-Elution
Raw data
This directory contains raw data that is subsequently processed into datasets bundled with the PrInCE R package, following Hadley Wickham's guide to including data in packages.
The example dataset that is included with PrInCE by default is taken from Scott et al., Mol. Syst. Biol. 2017 (doi: 10.15252/msb.20167067). The replicate included with the package is the heavy isotope channel from replicate #1 of the cytosolic interactome (i.e., the SEC-PCP-SILAC condition); it was chosen because it is the smallest of the 12 co-elution matrices generated in this study after compression.
To ensure complete reproducibility, the code included in this directory generates the data matrix that is bundled with the R package from an Excel spreadsheet that is included in the supplementary materials associated with the paper, and which is available for download from the journal website.
The package also includes a set of 477 "gold standard" complexes obtained from the EBI Complex Portal (downloaded December 17, 2018). These are included to demonstrate the prediction functionality.
fosterlab/PrInCE documentation built on Dec. 13, 2020, 5:50 a.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Raw data
This directory contains raw data that is subsequently processed into datasets bundled with the PrInCE R package, following Hadley Wickham's guide to including data in packages.
The example dataset that is included with PrInCE by default is taken from Scott et al., Mol. Syst. Biol. 2017 (doi: 10.15252/msb.20167067). The replicate included with the package is the heavy isotope channel from replicate #1 of the cytosolic interactome (i.e., the SEC-PCP-SILAC condition); it was chosen because it is the smallest of the 12 co-elution matrices generated in this study after compression.
To ensure complete reproducibility, the code included in this directory generates the data matrix that is bundled with the R package from an Excel spreadsheet that is included in the supplementary materials associated with the paper, and which is available for download from the journal website.
The package also includes a set of 477 "gold standard" complexes obtained from the EBI Complex Portal (downloaded December 17, 2018). These are included to demonstrate the prediction functionality.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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