fperraudeau/gphmm: Generalized Pair Hidden Markov Chain Model for Sequence Alignment

Implementation of a generalized pair hidden Markov chain model (GPHMM) that can be used to compute the probability of alignment between two sequences of nucleotides (e.g., a reference sequence and a noisy sequenced read). The model can be trained on a dataset where the noisy sequenced reads are known to have been sequenced from known reference sequences. If no training sets are available default parameters can be used.

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fperraudeau/gphmm documentation built on May 30, 2019, 6:55 p.m.