Files in fperraudeau/gphmm
Generalized Pair Hidden Markov Chain Model for Sequence Alignment
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md
R/RcppExports.R
R/computeGPHMM.R
R/generateData.R
R/trainGPHMM.R
README.md
cran-comments.md
gphmm.Rproj
inst/gphmm
man/calculategphmm.Rd
man/computeCounts.Rd
man/computeGphmmParam.Rd
man/computegphmm.Rd
man/generateRandomSequences.Rd
man/generateRead.Rd
man/initializeGphmm.Rd
man/makeGphmmPerRead.Rd
src/RcppExports.cpp
src/calculategphmm.cpp
tests/testthat.R
tests/testthat/test_computegphmm.R
tests/testthat/test_generateRandomSequences.R
tests/testthat/test_initializeGphmm.R
vignettes/gphmm.Rmd
