README.md
In fperraudeau/gphmm: Generalized Pair Hidden Markov Chain Model for Sequence Alignment
gphmm
Generalized Pair Hidden Markov Model (GPHMM)
This package trains a GPHMM and computes GPHMM probabilities.
The model will is described in details in https://www.biorxiv.org/content/early/2017/12/04/228619.
Installation
install.packages('gphmm')
Note that gphmm package need compilation of C++ code.
Installing from CRAN is recommended. However, if you want to install the version from GitHub, you can do so with the following lines of code
library(devtools)
install_github("fperraudeau/gphmm")
fperraudeau/gphmm documentation built on May 30, 2019, 6:55 p.m.
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gphmm
Generalized Pair Hidden Markov Model (GPHMM)
This package trains a GPHMM and computes GPHMM probabilities.
The model will is described in details in https://www.biorxiv.org/content/early/2017/12/04/228619.
Installation
install.packages('gphmm')
Note that gphmm package need compilation of C++ code.
Installing from CRAN is recommended. However, if you want to install the version from GitHub, you can do so with the following lines of code
library(devtools)
install_github("fperraudeau/gphmm")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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