Description Usage Arguments Value Author(s) References Examples
Phylogenetic tree simulation, given the model and parameters.
1 |
ct |
Crown time |
lambda0,mu0 |
Speciation and extinction rates parameter (they depends on the model) |
K |
Carring capacity (For diversity-dependance model only) |
Model |
Diversification rates model. The available models are 'dd' for diversity dependance and 'cr' for constant rate model |
PrintEv |
Prints the events while occurring in the tree |
seed |
Seed for the simulation. |
tree |
A list containing 4 elements: wt are the waiting times of the tree, E is the binary vector representing speciations or extinctions, n is the number of species at each node of the tree and br are the branching times of the nodes. |
phylo |
is the phylo object corresponding to the tree |
tree.extant |
Same as tree, but removing extinct species |
extant.phylo |
phylo of the extant-species tree |
F. Richter M.
[1] The nice paper
1 2 |
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