Files in franciscorichter/dmea02
Diversification and Macro-Evolution Analysis

.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
Experiments/1segment.Rmd
Experiments/1segment.html
Experiments/1segment_cache/html/. nc2_2ae34fcba9c2135609147ad9992eaad7.RData
Experiments/1segment_cache/html/. nc2_2ae34fcba9c2135609147ad9992eaad7.rdb
Experiments/1segment_cache/html/. nc2_2ae34fcba9c2135609147ad9992eaad7.rdx
Experiments/1segment_cache/html/__packages
Experiments/1segment_cache/html/com001_0a483648e69fbc2dd60f6c4eba8e850d.RData
Experiments/1segment_cache/html/com001_0a483648e69fbc2dd60f6c4eba8e850d.rdb
Experiments/1segment_cache/html/com001_0a483648e69fbc2dd60f6c4eba8e850d.rdx
Experiments/1segment_cache/html/com018_af2428af29a3f232c47392b734029afa.RData
Experiments/1segment_cache/html/com018_af2428af29a3f232c47392b734029afa.rdb
Experiments/1segment_cache/html/com018_af2428af29a3f232c47392b734029afa.rdx
Experiments/1segment_cache/html/com01_3174ea71b32f07580a4827b4b3b8f687.RData
Experiments/1segment_cache/html/com01_3174ea71b32f07580a4827b4b3b8f687.rdb
Experiments/1segment_cache/html/com01_3174ea71b32f07580a4827b4b3b8f687.rdx
Experiments/1segment_cache/html/com_752da44c53e16d78fd5b3b78f6bd5dbc.RData
Experiments/1segment_cache/html/com_752da44c53e16d78fd5b3b78f6bd5dbc.rdb
Experiments/1segment_cache/html/com_752da44c53e16d78fd5b3b78f6bd5dbc.rdx
Experiments/1segment_cache/html/ex0001_d3152b29a34196c62af50a2660316d44.RData
Experiments/1segment_cache/html/ex0001_d3152b29a34196c62af50a2660316d44.rdb
Experiments/1segment_cache/html/ex0001_d3152b29a34196c62af50a2660316d44.rdx
Experiments/1segment_cache/html/ex0001s_e9c0ea548bf06b2029d68eb85b687978.RData
Experiments/1segment_cache/html/ex0001s_e9c0ea548bf06b2029d68eb85b687978.rdb
Experiments/1segment_cache/html/ex0001s_e9c0ea548bf06b2029d68eb85b687978.rdx
Experiments/1segment_cache/html/ex001_26417ae29d80a9934495ab590055f944.RData
Experiments/1segment_cache/html/ex001_26417ae29d80a9934495ab590055f944.rdb
Experiments/1segment_cache/html/ex001_26417ae29d80a9934495ab590055f944.rdx
Experiments/1segment_cache/html/ex001s_40004eda8012be6ce0bae3a09563ed36.RData
Experiments/1segment_cache/html/ex001s_40004eda8012be6ce0bae3a09563ed36.rdb
Experiments/1segment_cache/html/ex001s_40004eda8012be6ce0bae3a09563ed36.rdx
Experiments/1segment_cache/html/ex01_bab522c19a6481709a9c73f78299dda6.RData
Experiments/1segment_cache/html/ex01_bab522c19a6481709a9c73f78299dda6.rdb
Experiments/1segment_cache/html/ex01_bab522c19a6481709a9c73f78299dda6.rdx
Experiments/1segment_cache/html/ex01s_42a14499c2906759fc612c4dfdb0b009.RData
Experiments/1segment_cache/html/ex01s_42a14499c2906759fc612c4dfdb0b009.rdb
Experiments/1segment_cache/html/ex01s_42a14499c2906759fc612c4dfdb0b009.rdx
Experiments/1segment_cache/html/ex102_8a6cd92aaf2020168b6900f211052338.RData
Experiments/1segment_cache/html/ex102_8a6cd92aaf2020168b6900f211052338.rdb
Experiments/1segment_cache/html/ex102_8a6cd92aaf2020168b6900f211052338.rdx
Experiments/1segment_cache/html/ex10_ab414984c45e0738ca81854626b3def7.RData
Experiments/1segment_cache/html/ex10_ab414984c45e0738ca81854626b3def7.rdb
Experiments/1segment_cache/html/ex10_ab414984c45e0738ca81854626b3def7.rdx
Experiments/1segment_cache/html/ex16s01_983512724e3fab29689e5d309dcbd9a5.RData
Experiments/1segment_cache/html/ex16s01_983512724e3fab29689e5d309dcbd9a5.rdb
Experiments/1segment_cache/html/ex16s01_983512724e3fab29689e5d309dcbd9a5.rdx
Experiments/1segment_cache/html/ex16s1_2523c6287831cab8aba651260cd11945.RData
Experiments/1segment_cache/html/ex16s1_2523c6287831cab8aba651260cd11945.rdb
Experiments/1segment_cache/html/ex16s1_2523c6287831cab8aba651260cd11945.rdx
Experiments/1segment_cache/html/ex16s_aa815caec86731fce09804c613caef22.RData
Experiments/1segment_cache/html/ex16s_aa815caec86731fce09804c613caef22.rdb
Experiments/1segment_cache/html/ex16s_aa815caec86731fce09804c613caef22.rdx
Experiments/1segment_cache/html/ex1_8fc9cae0aecec73550b9ef11c07a39e1.RData
Experiments/1segment_cache/html/ex1_8fc9cae0aecec73550b9ef11c07a39e1.rdb
Experiments/1segment_cache/html/ex1_8fc9cae0aecec73550b9ef11c07a39e1.rdx
Experiments/1segment_cache/html/ex1s_9eb87d85691c4be2d6d3c4a7561985da.RData
Experiments/1segment_cache/html/ex1s_9eb87d85691c4be2d6d3c4a7561985da.rdb
Experiments/1segment_cache/html/ex1s_9eb87d85691c4be2d6d3c4a7561985da.rdx
Experiments/1segment_cache/html/extra2_37578cbdde25b115d7fc281050bb7012.RData
Experiments/1segment_cache/html/extra2_37578cbdde25b115d7fc281050bb7012.rdb
Experiments/1segment_cache/html/extra2_37578cbdde25b115d7fc281050bb7012.rdx
Experiments/1segment_cache/html/extra_7dd57c92eed04014f88ab7a71b0df251.RData
Experiments/1segment_cache/html/extra_7dd57c92eed04014f88ab7a71b0df251.rdb
Experiments/1segment_cache/html/extra_7dd57c92eed04014f88ab7a71b0df251.rdx
Experiments/1segment_cache/html/mcem10_431a1dd16d483e162872c83885c4539d.RData
Experiments/1segment_cache/html/mcem10_431a1dd16d483e162872c83885c4539d.rdb
Experiments/1segment_cache/html/mcem10_431a1dd16d483e162872c83885c4539d.rdx
Experiments/1segment_cache/html/mcem1_8b9c6d6b5b067eb5d8cd2feeee485d82.RData
Experiments/1segment_cache/html/mcem1_8b9c6d6b5b067eb5d8cd2feeee485d82.rdb
Experiments/1segment_cache/html/mcem1_8b9c6d6b5b067eb5d8cd2feeee485d82.rdx
Experiments/1segment_cache/html/mcem2_7697b9f3401202c444e13db9529f77ff.RData
Experiments/1segment_cache/html/mcem2_7697b9f3401202c444e13db9529f77ff.rdb
Experiments/1segment_cache/html/mcem2_7697b9f3401202c444e13db9529f77ff.rdx
Experiments/1segment_cache/html/mcem3_dc1e80f1e25fe638b067226716072472.RData
Experiments/1segment_cache/html/mcem3_dc1e80f1e25fe638b067226716072472.rdb
Experiments/1segment_cache/html/mcem3_dc1e80f1e25fe638b067226716072472.rdx
Experiments/1segment_cache/html/mcem4_7a43978792a08652a5b7921a297a49cd.RData
Experiments/1segment_cache/html/mcem4_7a43978792a08652a5b7921a297a49cd.rdb
Experiments/1segment_cache/html/mcem4_7a43978792a08652a5b7921a297a49cd.rdx
Experiments/1segment_cache/html/mcem5_cd6e290e358750aa242714f2e5ac3831.RData
Experiments/1segment_cache/html/mcem5_cd6e290e358750aa242714f2e5ac3831.rdb
Experiments/1segment_cache/html/mcem5_cd6e290e358750aa242714f2e5ac3831.rdx
Experiments/1segment_cache/html/mcem6_9ec7b635e9031ece5ddf9294ad37433c.RData
Experiments/1segment_cache/html/mcem6_9ec7b635e9031ece5ddf9294ad37433c.rdb
Experiments/1segment_cache/html/mcem6_9ec7b635e9031ece5ddf9294ad37433c.rdx
Experiments/1segment_cache/html/mcem7_790d1cb23ffb4cd576f2574e66916e9e.RData
Experiments/1segment_cache/html/mcem7_790d1cb23ffb4cd576f2574e66916e9e.rdb
Experiments/1segment_cache/html/mcem7_790d1cb23ffb4cd576f2574e66916e9e.rdx
Experiments/1segment_cache/html/mcem8_1b52f40b679f0b8b9cdc9148b8e72a65.RData
Experiments/1segment_cache/html/mcem8_1b52f40b679f0b8b9cdc9148b8e72a65.rdb
Experiments/1segment_cache/html/mcem8_1b52f40b679f0b8b9cdc9148b8e72a65.rdx
Experiments/1segment_cache/html/mcem9_040158b7cfba510c0c3b486f555df3d9.RData
Experiments/1segment_cache/html/mcem9_040158b7cfba510c0c3b486f555df3d9.rdb
Experiments/1segment_cache/html/mcem9_040158b7cfba510c0c3b486f555df3d9.rdx
Experiments/1segment_cache/html/nc1_97c4d03982b9154566c0c631992087f9.RData
Experiments/1segment_cache/html/nc1_97c4d03982b9154566c0c631992087f9.rdb
Experiments/1segment_cache/html/nc1_97c4d03982b9154566c0c631992087f9.rdx
Experiments/1segment_cache/html/pois1_b167c7033e9d0cdb1cbf4f730ee2cdc6.RData
Experiments/1segment_cache/html/pois1_b167c7033e9d0cdb1cbf4f730ee2cdc6.rdb
Experiments/1segment_cache/html/pois1_b167c7033e9d0cdb1cbf4f730ee2cdc6.rdx
Experiments/1segment_cache/html/unnamed-chunk-1_17878a02dcc5e97ab42173f38b84b435.RData
Experiments/1segment_cache/html/unnamed-chunk-1_17878a02dcc5e97ab42173f38b84b435.rdb
Experiments/1segment_cache/html/unnamed-chunk-1_17878a02dcc5e97ab42173f38b84b435.rdx
Experiments/1segment_cache/html/unnamed-chunk-2_09598d7bf7623e6871cef550880858b8.RData
Experiments/1segment_cache/html/unnamed-chunk-2_09598d7bf7623e6871cef550880858b8.rdb
Experiments/1segment_cache/html/unnamed-chunk-2_09598d7bf7623e6871cef550880858b8.rdx
Experiments/1segment_cache/html/unnamed-chunk-3_cec1206b3ad9d45af27e0611041f38d3.RData
Experiments/1segment_cache/html/unnamed-chunk-3_cec1206b3ad9d45af27e0611041f38d3.rdb
Experiments/1segment_cache/html/unnamed-chunk-3_cec1206b3ad9d45af27e0611041f38d3.rdx
Experiments/1segment_cache/html/unnamed-chunk-4_03f0b507220202894c8aac84aa057be6.RData
Experiments/1segment_cache/html/unnamed-chunk-4_03f0b507220202894c8aac84aa057be6.rdb
Experiments/1segment_cache/html/unnamed-chunk-4_03f0b507220202894c8aac84aa057be6.rdx
Experiments/1segment_cache/html/unnamed-chunk-5_fa31b0643b4d53e111a438e4c6517bf5.RData
Experiments/1segment_cache/html/unnamed-chunk-5_fa31b0643b4d53e111a438e4c6517bf5.rdb
Experiments/1segment_cache/html/unnamed-chunk-5_fa31b0643b4d53e111a438e4c6517bf5.rdx
Experiments/1segment_cache/html/unnamed-chunk-6_889622a38c380dccb5550c32f97278c2.RData
Experiments/1segment_cache/html/unnamed-chunk-6_889622a38c380dccb5550c32f97278c2.rdb
Experiments/1segment_cache/html/unnamed-chunk-6_889622a38c380dccb5550c32f97278c2.rdx
Experiments/1segment_cache/html/unnamed-chunk-7_b7e53834a703356ac064792e81b1b6bf.RData
Experiments/1segment_cache/html/unnamed-chunk-7_b7e53834a703356ac064792e81b1b6bf.rdb
Experiments/1segment_cache/html/unnamed-chunk-7_b7e53834a703356ac064792e81b1b6bf.rdx
Experiments/1segment_cache/html/unnamed-chunk-8_956a5720c0deda96fd555961ad5ce46e.RData
Experiments/1segment_cache/html/unnamed-chunk-8_956a5720c0deda96fd555961ad5ce46e.rdb
Experiments/1segment_cache/html/unnamed-chunk-8_956a5720c0deda96fd555961ad5ce46e.rdx
Experiments/1segment_cache/html/unnamed-chunk-9_e79b23ea53d99789b887e71a9a2542a0.RData
Experiments/1segment_cache/html/unnamed-chunk-9_e79b23ea53d99789b887e71a9a2542a0.rdb
Experiments/1segment_cache/html/unnamed-chunk-9_e79b23ea53d99789b887e71a9a2542a0.rdx
Experiments/1segment_files/figure-html/. nc2-1.png
Experiments/1segment_files/figure-html/. nc2-2.png
Experiments/1segment_files/figure-html/ex0001-1.png
Experiments/1segment_files/figure-html/ex0001-2.png
Experiments/1segment_files/figure-html/ex0001s-1.png
Experiments/1segment_files/figure-html/ex0001s-2.png
Experiments/1segment_files/figure-html/ex001-1.png
Experiments/1segment_files/figure-html/ex001-2.png
Experiments/1segment_files/figure-html/ex001s-1.png
Experiments/1segment_files/figure-html/ex001s-2.png
Experiments/1segment_files/figure-html/ex01-1.png
Experiments/1segment_files/figure-html/ex01-2.png
Experiments/1segment_files/figure-html/ex01s-1.png
Experiments/1segment_files/figure-html/ex01s-2.png
Experiments/1segment_files/figure-html/ex1-1.png
Experiments/1segment_files/figure-html/ex1-2.png
Experiments/1segment_files/figure-html/ex1-3.png
Experiments/1segment_files/figure-html/ex1-4.png
Experiments/1segment_files/figure-html/ex1-5.png
Experiments/1segment_files/figure-html/ex1-6.png
Experiments/1segment_files/figure-html/ex10-1.png
Experiments/1segment_files/figure-html/ex10-2.png
Experiments/1segment_files/figure-html/ex10-3.png
Experiments/1segment_files/figure-html/ex10-4.png
Experiments/1segment_files/figure-html/ex10-5.png
Experiments/1segment_files/figure-html/ex10-6.png
Experiments/1segment_files/figure-html/ex102-1.png
Experiments/1segment_files/figure-html/ex102-2.png
Experiments/1segment_files/figure-html/ex102-3.png
Experiments/1segment_files/figure-html/ex102-4.png
Experiments/1segment_files/figure-html/ex102-5.png
Experiments/1segment_files/figure-html/ex102-6.png
Experiments/1segment_files/figure-html/ex16s-1.png
Experiments/1segment_files/figure-html/ex16s-2.png
Experiments/1segment_files/figure-html/ex1s-1.png
Experiments/1segment_files/figure-html/ex1s-2.png
Experiments/1segment_files/figure-html/extra-1.png
Experiments/1segment_files/figure-html/extra-2.png
Experiments/1segment_files/figure-html/extra2-1.png
Experiments/1segment_files/figure-html/extra2-2.png
Experiments/1segment_files/figure-html/mcem1-1.png
Experiments/1segment_files/figure-html/mcem1-2.png
Experiments/1segment_files/figure-html/mcem10-1.png
Experiments/1segment_files/figure-html/mcem10-2.png
Experiments/1segment_files/figure-html/mcem2-1.png
Experiments/1segment_files/figure-html/mcem2-2.png
Experiments/1segment_files/figure-html/mcem3-1.png
Experiments/1segment_files/figure-html/mcem3-2.png
Experiments/1segment_files/figure-html/mcem4-1.png
Experiments/1segment_files/figure-html/mcem4-2.png
Experiments/1segment_files/figure-html/mcem5-1.png
Experiments/1segment_files/figure-html/mcem5-2.png
Experiments/1segment_files/figure-html/mcem6-1.png
Experiments/1segment_files/figure-html/mcem6-2.png
Experiments/1segment_files/figure-html/mcem7-1.png
Experiments/1segment_files/figure-html/mcem7-2.png
Experiments/1segment_files/figure-html/mcem8-1.png
Experiments/1segment_files/figure-html/mcem8-2.png
Experiments/1segment_files/figure-html/mcem9-1.png
Experiments/1segment_files/figure-html/mcem9-2.png
Experiments/1segment_files/figure-html/nc1-1.png
Experiments/1segment_files/figure-html/nc1-2.png
Experiments/1segment_files/figure-html/pois1-1.png
Experiments/1segment_files/figure-html/pois1-2.png
Experiments/1segment_files/figure-html/unnamed-chunk-2-1.png
Experiments/1segment_files/figure-html/unnamed-chunk-2-2.png
Experiments/1segment_files/figure-html/unnamed-chunk-2-3.png
Experiments/1segment_files/figure-html/unnamed-chunk-2-4.png
Experiments/1segment_files/figure-html/unnamed-chunk-2-5.png
Experiments/1segment_files/figure-html/unnamed-chunk-2-6.png
Experiments/1segment_files/figure-html/unnamed-chunk-3-1.png
Experiments/1segment_files/figure-html/unnamed-chunk-3-2.png
Experiments/1segment_files/figure-html/unnamed-chunk-3-3.png
Experiments/1segment_files/figure-html/unnamed-chunk-4-1.png
Experiments/1segment_files/figure-html/unnamed-chunk-4-2.png
Experiments/1segment_files/figure-html/unnamed-chunk-4-3.png
Experiments/1segment_files/figure-html/unnamed-chunk-5-1.png
Experiments/1segment_files/figure-html/unnamed-chunk-5-2.png
Experiments/1segment_files/figure-html/unnamed-chunk-5-3.png
Experiments/1segment_files/figure-html/unnamed-chunk-6-1.png
Experiments/1segment_files/figure-html/unnamed-chunk-6-2.png
Experiments/1segment_files/figure-html/unnamed-chunk-6-3.png
Experiments/1segment_files/figure-html/unnamed-chunk-7-1.png
Experiments/1segment_files/figure-html/unnamed-chunk-7-2.png
Experiments/1segment_files/figure-html/unnamed-chunk-7-3.png
Experiments/1segment_files/figure-html/unnamed-chunk-7-4.png
Experiments/1segment_files/figure-html/unnamed-chunk-8-1.png
Experiments/1segment_files/figure-html/unnamed-chunk-8-2.png
Experiments/1segment_files/figure-html/unnamed-chunk-8-3.png
Experiments/1segment_files/figure-html/unnamed-chunk-8-4.png
Experiments/lighting.Rmd
Experiments/lighting.html
Experiments/lighting.pdf Experiments/mcem.R
Experiments/rsconnect/documents/1segment.Rmd/rpubs.com/rpubs/Document.dcf
Experiments/rsconnect/documents/1segment.Rmd/rpubs.com/rpubs/Publish Document.dcf
NAMESPACE
R/MCEM.phylo.R R/experiments.R R/internal functions and objects.R R/llik.R R/llik.st.R R/mle.st.R R/mle.tree.R R/phylo2vectors.R R/rec.tree.R R/rec.tree2.R R/sim.srt.R R/sim.tree.R R/update.tree.R R/vectors2phylo.R README.md Usage.Rmd Usage.pdf cv_4.pdf
dendroica.png
dmea02.Rproj
koramius.png
man/MCEM.phylo.Rd man/llik.Rd man/llik.st.Rd man/mle.st.Rd man/mle.tree.Rd man/phylo2vectors.Rd man/rec.tree.Rd man/sim.srt.Rd man/sim.tree.Rd man/update.tree.Rd man/vectors2phylo.Rd
parnassius.png
xenarthrans.png
franciscorichter/dmea02 documentation built on March 21, 2020, 3:46 a.m.