rec.tree: Reconstruction of extant species tree

In franciscorichter/dmea02: Diversification and Macro-Evolution Analysis

Description

Given a extant-species tree, it simulates extincted species on it (It should be called sim.extinct)

Usage

rec.tree(tree, pars, model = "dd", seed = 0, adjustment = FALSE)

Arguments

tree	extant species tree given by marcov process wt, n and E.
pars	parameters corresponding to diversity-dependance model
model	choose model... currently diversity-dependance only
seed	random seed for replication
adjustment	I don´t know what is that

Value

it will return a full extant+extinc phylogenetic tree...

Author(s)

F. Richter M.

Examples

 s = sim.tree()
 rec = rec.tree(tree=s$tree.extant, pars = c(0.8,0.1,40))

franciscorichter/dmea02 documentation built on March 21, 2020, 3:46 a.m.