phylo2vectors: Convert phylo to vectors

In franciscorichter/dmea02: Diversification and Macro-Evolution Analysis

Description

Convert phylo objects onto a set of vectors of markov chains that carachterize the phylogenetic tree

Usage

phylo2vectors(tree)

Arguments

tree	phylo object

Value

wt	waiting times of the tree
E	binary vector specifying if speciation or extinction
S	complementary vector specifiying which species got extincted or speciated
n	vector containing the number of species

Author(s)

F. Richter M.

Examples

s = sim.tree()
all.equal(s$tree$wt,phylo2vectors(s$phylo)$wt)
all.equal(s$tree$E,phylo2vectors(s$phylo)$E)
all.equal(s$tree$n,phylo2vectors(s$phylo)$n)

franciscorichter/dmea02 documentation built on March 21, 2020, 3:46 a.m.