calcGraphOverlap: This function calculates the overlap of 2 graphs
In frankkramer-lab/rBiopaxParser: Parses BioPax files and represents them in R
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/visualizeBiopax.R
Description
This function calculates the overlap of supplied graph1 with graph2.
Layout and weights of graph1 are kept.
Usage
1
calcGraphOverlap(graph1, graph2)
Arguments
graph1
graphNEL
graph2
graphNEL
Value
Returns a list containing the compared graphs and edge- and node-wise overlap between them.
Author(s)
Frank Kramer
Examples
1
2
3
4
5
6
7
# load data
data(biopaxexample)
pwid1 = "pid_p_100002_wntpathway"
pwid2 = "pid_p_100146_hespathway"
mygraph1 = pathway2RegulatoryGraph(biopax, pwid1)
mygraph2 = pathway2RegulatoryGraph(biopax, pwid2)
calcGraphOverlap(mygraph1,mygraph2)
frankkramer-lab/rBiopaxParser documentation built on July 19, 2020, 9:49 a.m.
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Description Usage Arguments Value Author(s) Examples
View source: R/visualizeBiopax.R
Description
This function calculates the overlap of supplied graph1 with graph2. Layout and weights of graph1 are kept.
Usage
1 | calcGraphOverlap(graph1, graph2)
|
Arguments
graph1 |
graphNEL |
graph2 |
graphNEL |
Value
Returns a list containing the compared graphs and edge- and node-wise overlap between them.
Author(s)
Frank Kramer
Examples
1 2 3 4 5 6 7 | # load data
data(biopaxexample)
pwid1 = "pid_p_100002_wntpathway"
pwid2 = "pid_p_100146_hespathway"
mygraph1 = pathway2RegulatoryGraph(biopax, pwid1)
mygraph2 = pathway2RegulatoryGraph(biopax, pwid2)
calcGraphOverlap(mygraph1,mygraph2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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