API for frankkramer-lab/rBiopaxParser
Parses BioPax files and represents them in R

Global functions
CLASS_INHERITANCE_BP2 Man page
CLASS_INHERITANCE_BP3 Man page
CLASS_PROPERTIES_BP2 Man page
CLASS_PROPERTIES_BP3 Man page
DATABASE_BIOPAX Man page
addBiochemicalReaction Man page Source code
addBiopaxInstance Man page Source code
addBiopaxInstances Man page Source code
addControl Man page Source code
addPathway Man page Source code
addPathwayComponents Man page Source code
addPhysicalEntity Man page Source code
addPhysicalEntityParticipant Man page Source code
addPropertiesToBiopaxInstance Man page Source code
addhash Man page Source code
addns Man page Source code
biopax Man page
biopaxLevel3Example Man page
biopaxexample Man page
calcGraphOverlap Man page Source code
checkValidity Man page Source code
colorGraphNodes Man page Source code
combineNodes Man page Source code
createBiopax Man page Source code
diffGraphs Man page Source code
downloadBiopaxData Man page Source code
generateNewUniqueID Man page Source code
getClassProperties Man page Source code
getInstanceClass Man page Source code
getInstanceProperty Man page Source code
getNeighborhood Man page Source code
getParticipants Man page Source code
getReferencedIDs Man page Source code
getReferencingIDs Man page Source code
getSubClasses Man page Source code
getSuperClasses Man page Source code
getXrefAnnotations Man page Source code
hasProperty Man page Source code
internal_NrOfXMLNodes Man page Source code
internal_XMLInstance2DF Man page Source code
internal_checkArguments Man page Source code
internal_generateXMLfromBiopax Man page Source code
internal_getBiopaxModelAsDataFrame Man page Source code
internal_propertyListToDF Man page Source code
internal_resolvePhysicalEntityParticipant Man page Source code
intersectGraphs Man page Source code
isOfClass Man page Source code
isOfNamespace Man page Source code
isURL Man page Source code
layoutRegulatoryGraph Man page Source code
listComplexComponents Man page Source code
listInstances Man page Source code
listInteractionComponents Man page Source code
listPathwayComponents Man page Source code
listPathways Man page Source code
mergePathways Man page Source code
pathway2AdjacancyMatrix Man page Source code
pathway2Geneset Man page Source code
pathway2Graph Man page Source code
pathway2RegulatoryGraph Man page Source code
plotRegulatoryGraph Man page Source code
print.biopax Man page Source code
rBiopaxParser Man page
rBiopaxParser-package Man page
readBiopax Man page Source code
removeDisconnectedParts Man page Source code
removeInstance Man page Source code
removeNodes Man page Source code
removeProperties Man page Source code
selectInstances Man page Source code
splitComplex Man page Source code
striphash Man page Source code
stripns Man page Source code
transitiveClosure Man page Source code
transitiveReduction Man page Source code
unfactorize Man page Source code
uniteGraphs Man page Source code
writeBiopax Man page Source code
frankkramer-lab/rBiopaxParser documentation built on May 14, 2017, 3:33 a.m.