transitiveClosure: This function generates the transitive closure of the...

Description Usage Arguments Value Author(s) Examples

View source: R/visualizeBiopax.R

Description

This function generates the transitive closure of the supplied graph. In short: if A->B->C then an edge A->C is added. Edge weights are conserved if possible (in a hopefully smart way). This is a simple convenience wrapper for the RBGL function transitive.closure.

Usage

1

Arguments

mygraph

graphNEL

Value

Returns the transitive closure of the supplied graph.

Author(s)

Frank Kramer

Examples

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# load data
data(biopaxexample)
pwid1 = "pid_p_100002_wntpathway"
pwid2 = "pid_p_100146_hespathway"
mygraph = pathway2RegulatoryGraph(biopax, pwid1)
tc = transitiveClosure(mygraph)

frankkramer-lab/rBiopaxParser documentation built on July 19, 2020, 9:49 a.m.