createBiopax: This function creates a new Biopax model from scratch

Description Usage Arguments Value Author(s) Examples

View source: R/parseBiopax.R

Description

This function creates a new Biopax model from scratch. This is not necessary if you want to parse a BioPAX export from a file, please see: readBiopax. Returns a biopax model, which is a list with named elements:

df

The data.frame representing the biopax in R

ns_rdf

RDF Namespace

ns_owl

OWL Namespace

ns_bp

Biopax Namespace

file

NULL

Usage

1
createBiopax(level = 3)

Arguments

level

integer. Specifies the BioPAX level.

Value

A biopax model

Author(s)

Frank Kramer

Examples

1
 biopax = createBiopax(level=2)

frankkramer-lab/rBiopaxParser documentation built on July 19, 2020, 9:49 a.m.