plotRegulatoryGraph: This function layouts a regulatory graph and plots it using...
In frankkramer-lab/rBiopaxParser: Parses BioPax files and represents them in R

Description Usage Arguments Value Author(s) Examples

This function takes a regulatory graph as generated by pathway2regulatoryGraph and plots it using standard layout options of layoutRegulatoryGraph. This function is a wrapper for layoutRegulatoryGraph with standard parameters. Subgraphs can be painted with different colors. This can be done by passing parameter subgraph a list of character vectors with node names.

1	plotRegulatoryGraph(mygraph, subgraphs = list(), layoutGraph = TRUE)

`mygraph`	graphNEL, regulatory graph
`subgraphs`	list of character vectors with node names
`layoutGraph`	logical. If FALSE the graph is not laid out again but send directly to Rgraphviz::renderGraph.

none

Frank Kramer

 # load data
 data(biopaxexample)
 pwid1 = "pid_p_100002_wntpathway"
 pwid2 = "pid_p_100146_hespathway"
 mygraph = pathway2RegulatoryGraph(biopax, pwid1)
 plotRegulatoryGraph(mygraph)