splitComplex: This functions splits up a complex into its components.

In frankkramer-lab/rBiopaxParser: Parses BioPax files and represents them in R

Description

This function looks up the supplied Complex ID and returns the names of all its components.

Usage

splitComplex(
  biopax,
  complexid,
  recursive = TRUE,
  returnIDonly = FALSE,
  biopaxlevel = 3
)

Arguments

biopax	A biopax model
complexid	string ID of an complex
recursive	logical
returnIDonly	logical. If TRUE only IDs of the components are returned. This saves tiem for looking up names for every single ID.
biopaxlevel	integer. Set the biopax level here if you supply a data.table directly.

Value

Returns a character vector with the names of all subcomponents.

Author(s)

Frank Kramer

Examples

 # load data
 data(biopaxexample)
 selectInstances(biopax, id="ex_m_100650")
 listInstances(biopax, id="ex_m_100650")
 listComplexComponents(biopax, id="ex_m_100650")
 splitComplex(biopax, complexid="ex_m_100650")

frankkramer-lab/rBiopaxParser documentation built on July 19, 2020, 9:49 a.m.