Man pages for fredcommo/rCGH
Comprehensive Pipeline for Analyzing and Visualizing Array-Based CGH Data

adjustSignalArray-based CGH Preprocessing
agilentDBaCGH Agilent Probes GC Fraction
AllAccessors'"rCGH"' Accessor Functions
byGeneTableConverting a Segmentation Table Into a By-Gene Table
EMnormalizeGenomic Profile Centralization
hg18Hg18 Chromosome Lengths and Centromere Locations
hg19Hg19 Chromosome Lengths and Centromere Locations
hg38Hg38 Chromosome Lengths and Centromere Locations
multiplotStatic Genomic Profile and LOH Visualization
plotDensityVisualizing the Log2Ratios Density and Centralization...
plotLOHAllelic Differences Visualization
plotProfileStatic Genomic Profile Visualization
rCGH-Agilent-classClass '"rCGH-Agilent"'
rCGH-classClass '"rCGH"'
rCGH-cytoScan-classClass '"rCGH-cytoScan"'
rCGH-generic-classClass '"rCGH-generic"'
rCGH-oncoScan-classClass '"rCGH-oncoScan"'
rCGH-packageComprehensive Pipeline for Analyzing and Visualizing...
rCGH-SNP6-classClass '"rCGH-SNP6"'
readAffyCytoScanAffymetrix CytoScanHD '"rCGH-cytoScan"' Constructor
readAffyOncoScanAffymetrix OncoScan '"rCGH-oncoScan"' Constructor
readAffySNP6Affymetrix SNP6 '"rCGH-SNP6"' Constructor
readAgilentAgilent Dual-Color Hybridization '"rCGH-Agilent"'...
readGenericGeneric rCGH object '"rCGH-generic"' Constructor
recenterRecentering a Genomic Profile
segmentCGHGenomic Profile Segmentation
setInfoAdding Information In An Object Of Class '"rCGH"'
show-methods'show' '"rCGH"'
viewInteractive Genomic Profile Visualization
fredcommo/rCGH documentation built on Nov. 25, 2017, 6:31 p.m.