Man pages for fredcommo/rCGH
Comprehensive Pipeline for Analyzing and Visualizing Array-Based CGH Data
| adjustSignal | Array-based CGH Preprocessing |
| agilentDB | aCGH Agilent Probes GC Fraction |
| AllAccessors | '"rCGH"' Accessor Functions |
| byGeneTable | Converting a Segmentation Table Into a By-Gene Table |
| EMnormalize | Genomic Profile Centralization |
| hg18 | Hg18 Chromosome Lengths and Centromere Locations |
| hg19 | Hg19 Chromosome Lengths and Centromere Locations |
| hg38 | Hg38 Chromosome Lengths and Centromere Locations |
| multiplot | Static Genomic Profile and LOH Visualization |
| plotDensity | Visualizing the Log2Ratios Density and Centralization... |
| plotLOH | Allelic Differences Visualization |
| plotProfile | Static Genomic Profile Visualization |
| rCGH-Agilent-class | Class '"rCGH-Agilent"' |
| rCGH-class | Class '"rCGH"' |
| rCGH-cytoScan-class | Class '"rCGH-cytoScan"' |
| rCGH-generic-class | Class '"rCGH-generic"' |
| rCGH-oncoScan-class | Class '"rCGH-oncoScan"' |
| rCGH-package | Comprehensive Pipeline for Analyzing and Visualizing... |
| rCGH-SNP6-class | Class '"rCGH-SNP6"' |
| readAffyCytoScan | Affymetrix CytoScanHD '"rCGH-cytoScan"' Constructor |
| readAffyOncoScan | Affymetrix OncoScan '"rCGH-oncoScan"' Constructor |
| readAffySNP6 | Affymetrix SNP6 '"rCGH-SNP6"' Constructor |
| readAgilent | Agilent Dual-Color Hybridization '"rCGH-Agilent"'... |
| readGeneric | Generic rCGH object '"rCGH-generic"' Constructor |
| recenter | Recentering a Genomic Profile |
| segmentCGH | Genomic Profile Segmentation |
| setInfo | Adding Information In An Object Of Class '"rCGH"' |
| show-methods | 'show' '"rCGH"' |
| view | Interactive Genomic Profile Visualization |
