# making table data sets
library(dplyr)
library(tidyr)
library(MorpheusData)
#############benchmark 1
dat <- read.table(text=
"GeneID D.1 T.1 D.2 T.2 D.8
A2M 18 50 2 6 A1
ABL1 20 48 4 8 C1
", header=T)
#dat <- read.table(text=
#"GeneID D.1 T.1 D.8
#A2M 18 50 A1
#ABL1 20 48 C1
#ACP1 16 8 E1
#", header=T)
write.csv(dat, "data-raw/p7_input1.csv", row.names=FALSE)
df_out = dat %>% gather(pt.num.type, value, 2:5) %>%
separate(pt.num.type, c("type", "pt.num")) %>%
spread(type, value) %>%
mutate(Ratio = D/T) %>% select(-`D.8`)
write.csv(df_out, "data-raw/p7_output1.csv", row.names=FALSE)
p7_output1 <- read.csv("data-raw/p7_output1.csv", check.names = FALSE)
fctr.cols <- sapply(p7_output1, is.factor)
int.cols <- sapply(p7_output1, is.integer)
p7_output1[, fctr.cols] <- sapply(p7_output1[, fctr.cols], as.character)
p7_output1[, int.cols] <- sapply(p7_output1[, int.cols], as.numeric)
save(p7_output1, file = "data/p7_output1.rdata")
p7_input1 <- read.csv("data-raw/p7_input1.csv", check.names = FALSE)
fctr.cols <- sapply(p7_input1, is.factor)
int.cols <- sapply(p7_input1, is.integer)
p7_input1[, fctr.cols] <- sapply(p7_input1[, fctr.cols], as.character)
p7_input1[, int.cols] <- sapply(p7_input1[, int.cols], as.numeric)
save(p7_input1, file = "data/p7_input1.rdata")
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