enrichment: Calculate enrichment using Fisher exact test
In frhl/pRoteomics: Proteomics analysis using R
Description
Usage
Arguments
See Also
Description
Calculate enrichment of a data and reference data base for
a specific bait and its interactors. Will do p-test using a fisher exact test
based on the overlap between the main data and the reference data which both
interacts with bait.
Usage
1
enrichment(data, bait, reference)
Arguments
data
data.frame containing columns gene and significance
bait
designated bait in the data.
reference
data base reference
See Also
Other genoppi:
designate(),
interactors(),
mttest(),
plotOverlap(),
plotScatter(),
plotVolcano()
frhl/pRoteomics documentation built on Feb. 19, 2020, 3:53 p.m.
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Description Usage Arguments See Also
Description
Calculate enrichment of a data and reference data base for a specific bait and its interactors. Will do p-test using a fisher exact test based on the overlap between the main data and the reference data which both interacts with bait.
Usage
1 | enrichment(data, bait, reference)
|
Arguments
data |
data.frame containing columns gene and significance |
bait |
designated bait in the data. |
reference |
data base reference |
See Also
Other genoppi:
designate(),
interactors(),
mttest(),
plotOverlap(),
plotScatter(),
plotVolcano()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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