expandProxies: Expand proxy interactions
In frhl/pRoteomics: Proteomics analysis using R
View source: R/expandProxies.R
Description
Somtimes in Proteomics, the antibody is specific to another protein other
than the bait. This script will look throught the top enriched proteins (i.e. logFC >> 0),
and see whether they have interactors found in inweb and the current dataset.
Usage
1
expandProxies(data, cutoff.fdr = 0.1, top = 10, verbose = T)
Value
a list of proteins that has inweb interactors in the dataset.
a table that can be inputted to genoppi
frhl/pRoteomics documentation built on Feb. 19, 2020, 3:53 p.m.
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View source: R/expandProxies.R
Description
Somtimes in Proteomics, the antibody is specific to another protein other than the bait. This script will look throught the top enriched proteins (i.e. logFC >> 0), and see whether they have interactors found in inweb and the current dataset.
Usage
1 | expandProxies(data, cutoff.fdr = 0.1, top = 10, verbose = T)
|
Value
a list of proteins that has inweb interactors in the dataset.
a table that can be inputted to genoppi
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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