API for friend1ws/pmsignature
Extracting characteristic mutation signatures from a set of mutation data.
| Global functions | |
|---|---|
| EstimatedParameters-class | Man page |
| MetaInformation-class | Man page |
| MutationFeatureData-class | Man page |
| PMSboundary | Man page |
| alignmentSignature | Man page |
| bootPMSignature | Man page |
| boundaryTurbo_F | Man page |
| boundaryTurbo_Q | Man page |
| calcPMSLikelihood | Man page |
| convertFromTurbo_F | Man page |
| convertFromTurbo_Q | Man page |
| convertSignatureMatrixToVector | Man page |
| convertToTurbo_F | Man page |
| convertToTurbo_Q | Man page |
| getBackgroudSignature | Man page |
| getCosDistance | Man page |
| getLogLikelihoodC | Man page |
| getMembershipValue | Man page |
| getMutMembership | Man page |
| getMutNum | Man page |
| getMutationFeatureVector | Man page |
| getPMSignature | Man page |
| getSignatureValue | Man page |
| getSignaturesForMultipleK | Man page |
| makeSimData | Man page |
| mySquareEM | Man page |
| readBGFile | Man page |
| readMFVFile | Man page |
| readMPFile | Man page |
| updateBackgroudSignatureFile | Man page |
| updateMstepFQC | Man page |
| updatePMSParam | Man page |
| updateTheta_NormalizedC | Man page |
| visMembership | Man page |
| visMembership2 | Man page |
| visPMS_full | Man page |
| visPMS_ind | Man page |
| visPMSignature | Man page |
