getBackgroudSignature: get mutation feature vector from context sequence data and...
In friend1ws/pmsignature: Extracting characteristic mutation signatures from a set of mutation data.
Description
get mutation feature vector from context sequence data and reference and alternate allele information
Usage
1
2
getBackgroudSignature(type = "independent", numBases = 3,
trDir = FALSE, trial = 1e+06)
Arguments
type
the type of mutation feature vecotr (should be "independent" or "full").
numBases
the number of flanking bases around the mutated position.
trDir
the index representing whether transcription direction is considered or not
trial
the number of randome site generations
friend1ws/pmsignature documentation built on May 16, 2019, 3:27 p.m.
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Description
get mutation feature vector from context sequence data and reference and alternate allele information
Usage
1 2 | getBackgroudSignature(type = "independent", numBases = 3,
trDir = FALSE, trial = 1e+06)
|
Arguments
type |
the type of mutation feature vecotr (should be "independent" or "full"). |
numBases |
the number of flanking bases around the mutated position. |
trDir |
the index representing whether transcription direction is considered or not |
trial |
the number of randome site generations |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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