TreeGhats.phylo | R Documentation |
The phylogenetic tree includes all the accepted taxon names at species level in the TreeGhatsData database.
data("TreeGhats.phylo")
TreeGhats.phylo
is an object of class phylo
, which can be analyzed and plotted with tools available in ape
package.
The phylogeny has been generated by applying create.phylo.all
to the accepted names in TreeGhatsData
. It does not include infrataxa.
It is based on the megaphylogeny of Jin and Qian (2019), and missing taxa are added with phylo.maker
with scenarios = "S3"
.
Qian H. & Jin Y. (2016). An updated megaphylogeny of plants, a tool for generating plant phylogenies, and an analysis of phylogenetic community structure. Journal of Plant Ecology. 9(2):233-239.
create.phylo.all
, phylo.maker
, TreeGhatsData
data(TreeGhats.phylo)
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