TreeGhats.phylo: Global phylogeny of the TreeGhatsData database
In frmunoz/TreeGhats: Taxonomic name resolution and phylogeny generator for Western Ghats trees
TreeGhats.phylo R Documentation
Global phylogeny of the TreeGhatsData database
Description
The phylogenetic tree includes all the accepted taxon names at species level in the TreeGhatsData database.
Usage
data("TreeGhats.phylo")
Format
TreeGhats.phylo is an object of class phylo, which can be analyzed and plotted with tools available in ape package.
Details
The phylogeny has been generated by applying create.phylo.all to the accepted names in TreeGhatsData. It does not include infrataxa.
It is based on the megaphylogeny of Jin and Qian (2019), and missing taxa are added with phylo.maker with scenarios = "S3".
References
Qian H. & Jin Y. (2016). An updated megaphylogeny of plants, a tool for generating plant phylogenies, and an analysis of phylogenetic community structure. Journal of Plant Ecology. 9(2):233-239.
See Also
create.phylo.all, phylo.maker, TreeGhatsData
Examples
data(TreeGhats.phylo)
frmunoz/TreeGhats documentation built on July 29, 2022, 5:21 a.m.
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| TreeGhats.phylo | R Documentation |
Global phylogeny of the TreeGhatsData database
Description
The phylogenetic tree includes all the accepted taxon names at species level in the TreeGhatsData database.
Usage
data("TreeGhats.phylo")
Format
TreeGhats.phylo is an object of class phylo, which can be analyzed and plotted with tools available in ape package.
Details
The phylogeny has been generated by applying create.phylo.all to the accepted names in TreeGhatsData. It does not include infrataxa.
It is based on the megaphylogeny of Jin and Qian (2019), and missing taxa are added with phylo.maker with scenarios = "S3".
References
Qian H. & Jin Y. (2016). An updated megaphylogeny of plants, a tool for generating plant phylogenies, and an analysis of phylogenetic community structure. Journal of Plant Ecology. 9(2):233-239.
See Also
create.phylo.all, phylo.maker, TreeGhatsData
Examples
data(TreeGhats.phylo)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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