API for fukayak/occumb
Site Occupancy Modeling for Environmental DNA Metabarcoding
| Global functions | |
|---|---|
| .cutil_local | Source code |
| .cutil_regional | Source code |
| .get_post_samples | Source code |
| .get_post_summary | Source code |
| .get_stats | Source code |
| Bayesian_p_value | Source code |
| Freeman_Tukey | Source code |
| add_attributes | Source code |
| add_attributes1 | Source code |
| add_attributes2 | Source code |
| add_attributes3 | Source code |
| add_attributes4 | Source code |
| add_attributes_predict | Source code |
| assert_occumbFit | Source code |
| check_args_eval_util_L | Source code |
| check_args_eval_util_R | Source code |
| check_args_get_posterior | Source code |
| check_args_occumb | Source code |
| check_intercept | Source code |
| check_newdata | Source code |
| check_wrong_terms | Source code |
| chi_squared | Source code |
| copy_psi_theta_phi | Source code |
| cutil_local | Source code |
| cutil_regional | Source code |
| df_to_array | Source code |
| eutil | Source code |
| eval_util_L | Man page Source code |
| eval_util_R | Man page Source code |
| find_maxJ | Source code |
| find_maxK | Source code |
| fish | Man page |
| fish_raw | Man page |
| get_data | Source code |
| get_list_cov | Source code |
| get_post_pred_link | Source code |
| get_post_samples | Man page Source code |
| get_post_summary | Man page Source code |
| get_posterior | Man page |
| get_stats | Source code |
| get_theta_phi_i | Source code |
| get_y_rep | Source code |
| get_z_i | Source code |
| gof | Man page Source code |
| has_intercept | Source code |
| inits_code | Source code |
| list_cond_L | Man page Source code |
| list_cond_R | Man page Source code |
| llmulti | Source code |
| occumb | Man page Source code |
| occumbData | Man page Source code |
| plot,occumbFit-method | Man page |
| plot,occumbGof-method | Man page |
| plot_gof | Source code |
| predict,occumbFit-method | Man page |
| predict_detect_probs_local | Source code |
| predict_detect_probs_regional | Source code |
| predict_pi | Source code |
| print_Rhat_neff | Source code |
| resample_z_psi_theta_phi | Source code |
| sample_u | Source code |
| sample_z | Source code |
| set_const | Source code |
| set_covariates | Source code |
| set_data | Source code |
| set_design_matrix | Source code |
| set_inits | Source code |
| set_modargs | Source code |
| set_params_monitored | Source code |
| set_phi_theta | Source code |
| set_psi | Source code |
| summary,occumbData-method | Man page |
| summary,occumbFit-method | Man page |
| validate_occumbData | Source code |
| with_seed | Source code |
| write_jags_model | Source code |
