R/show.R

In fukayak/occumb: Site Occupancy Modeling for Environmental DNA Metabarcoding

#' @include occumb.R
NULL

setMethod("show", "occumbFit",
  function(object) {
    print(object@fit)
  }
)

setMethod("show", "occumbGof",
  function(object) {
    statistics <- if (object@stats == "Freeman_Tukey") {
      "Freeman-Tukey"
    } else if (object@stats == "deviance") {
      "deviance"
    } else if (object@stats == "chi_squared") {
      "chi-squared"
    }
    cat(crayon::bold("Posterior predictive check for an occumbFit object:\n"))
    cat(" Statistics:", statistics, "\n")
    cat(" p-value:   ", round(object@p_value, 5), "\n")
    cat(" Discrepancy statistics for observed data:  ",
        round(mean(object@stats_obs), 2), "(mean),",
        round(stats::sd(object@stats_obs), 2), "(sd)",
        "\n")
    cat(" Discrepancy statistics for replicated data:",
        round(mean(object@stats_rep), 2), "(mean),",
        round(stats::sd(object@stats_rep), 2), "(sd)",
        "\n")
  }
)