Files in fursham-h/ponder
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/classifyAS.R
R/getASevents.R
R/getBestRef.R
R/getCoverage.R
R/getORF.R
R/getORFranges.R
R/getORFstart.R
R/getORFstop.R
R/gff3togtfconvert.R
R/identifyNMDcausing.R
R/makeGTF.R
R/matchGeneIDs.R
R/matchSeqLevels.R
R/old_classifyAltSegments.R
R/old_getORF.R
R/old_postFunctions.R
R/old_reconstructCDS.R
R/old_resizeTranscripts.R
R/old_secondary_modules.R
R/prep.preTesting.R
R/prep.prepareAnalysis.R
R/prep.prepareInputs.R
R/resizeGRangesTranscripts.R
R/run.main.R
R/supportFunctions.R
R/testNMD.R
R/txrevise_functions.R
R/workflow.R
README.md
data-raw/downloadMouseData.R
data-raw/transcripts.gtf
data/bak1Data.rda
data/cdsl.rda
data/data.rda
data/psd95Data.rda
data/ptbp2Data.rda
data/sampleOutput.rda
data/testRef.rda
data/txl.rda
inst/extdata/sampleQuery.gtf
man/classifyAS.Rd
man/classifyAltSegments.Rd
man/getBestRef.Rd
man/getORFold.Rd
man/gff3togtfconvert.Rd
man/indentifyAddedRemovedRegions.Rd
man/matchGeneIDs.Rd
man/matchSeqLevels.Rd
man/old_resizeTranscripts.Rd
man/prePonder.Rd
man/preTesting.Rd
man/prepareAnalysis.Rd
man/prepareInputs.Rd
man/reconstructCDS.Rd
man/reconstructCDSstart.Rd
man/resizeGRangesTranscripts.Rd
man/runMain.Rd
man/runPonder.Rd
man/testNMD.Rd
man/testTXforStart.Rd
tests/testthat.R
tests/testthat/test_exe.R
tests/testthat/test_resizeTranscripts.R
