getORFold: _ workflow: Test transcript for NMD feature against a...
In fursham-h/ponder:
Description
Usage
Arguments
Value
Description
THIS FUNCTION IS PART OF THE _ PROGRAM WORKFLOW.
This function will compare the query transcript with a reference CDS and tests
if insertion of alternative segments into the CDS generates an NMD substrate
Usage
1
getORFold(knownCDS, queryTx, refsequence, gene_id, transcript_id)
Arguments
knownCDS
queryTx
refsequence
gene_id
transcript_id
Value
df
fursham-h/ponder documentation built on Dec. 27, 2019, 12:15 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
THIS FUNCTION IS PART OF THE _ PROGRAM WORKFLOW. This function will compare the query transcript with a reference CDS and tests if insertion of alternative segments into the CDS generates an NMD substrate
Usage
1 | getORFold(knownCDS, queryTx, refsequence, gene_id, transcript_id)
|
Arguments
knownCDS |
|
queryTx |
|
refsequence |
|
gene_id |
|
transcript_id |
Value
df
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.