classifyAltSegments: Classify alternative splicing features
In fursham-h/ponder:
Description
Usage
Arguments
Value
Examples
View source: R/old_classifyAltSegments.R
Description
This function is an extension of the function indentifyAddedRemovedRegions by classifying
of the alternative segments
Usage
1
classifyAltSegments(transcript1, transcript2, txrevise_out = NULL)
Arguments
transcript1
GRanges Object containing exon structure of transcript 1
transcript2
GRanges Object containing exon structure of transcript 2
txrevise_out
Optional.
Value
a list of GRanges objects similar to 'indentifyAddedRemovedRegions()' output (txrevise_out).
?indentifyAddedRemovedRegions for more information
Examples
1
classifyAltSegments(ptbp2Data$transcripts$ENSMUST00000029780, ptbp2Data$transcripts$ENSMUST00000197833)
fursham-h/ponder documentation built on Dec. 27, 2019, 12:15 a.m.
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Description Usage Arguments Value Examples
View source: R/old_classifyAltSegments.R
Description
This function is an extension of the function indentifyAddedRemovedRegions by classifying of the alternative segments
Usage
1 | classifyAltSegments(transcript1, transcript2, txrevise_out = NULL)
|
Arguments
transcript1 |
GRanges Object containing exon structure of transcript 1 |
transcript2 |
GRanges Object containing exon structure of transcript 2 |
txrevise_out |
Optional. |
Value
a list of GRanges objects similar to 'indentifyAddedRemovedRegions()' output (txrevise_out). ?indentifyAddedRemovedRegions for more information
Examples
1 | classifyAltSegments(ptbp2Data$transcripts$ENSMUST00000029780, ptbp2Data$transcripts$ENSMUST00000197833)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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