prepareAnalysis: NMDer workflow: Preparing for analysis

In fursham-h/ponder:

Description

THIS FUNCTION IS PART OF THE NMDer PROGRAM WORKFLOW. This function will prepare output dataframes and GRanges objects for downstream workflow

Usage

prepareAnalysis(inputGRanges, basicGRanges)

Arguments

inputGRanges	Query GRanges object
basicGRanges	Reference GRanges object.

Value

Function will return a list containing: (1) dataframe of a list of query transcripts for downstream workflow (2) GRangesList of exon coordinates from query as dataframe (3) GRangesList of exon coordinates from reference as dataframe (4) GRangesList of exon coordinates of reference CDS as dataframe

fursham-h/ponder documentation built on Dec. 27, 2019, 12:15 a.m.