split_taxa: Split the taxonomic assinment into 7 taxa: Domain, Phylum,...
In gabrielrfernandes/tagme: Taxonomic Assignment of Genetic Markers for Ecology
Description
Usage
Arguments
Value
Description
Split the taxonomic assinment into 7 taxa: Domain, Phylum, Class, Order, Family and Specie
Usage
1
split_taxa(taxonomy)
Arguments
taxonomy
The taxonomy object produced by tagmeFromFasta or tagmeFromDada2 functions.
Value
A data frame with 7 columns: Domain, Phylum, Class, Order, Family and Specie, describing the taxonmy for each sequence. This data frame can be used as input for phyloseq::tax_table().
gabrielrfernandes/tagme documentation built on Dec. 25, 2021, 1:25 a.m.
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Description Usage Arguments Value
Description
Split the taxonomic assinment into 7 taxa: Domain, Phylum, Class, Order, Family and Specie
Usage
1 | split_taxa(taxonomy)
|
Arguments
taxonomy |
The taxonomy object produced by tagmeFromFasta or tagmeFromDada2 functions. |
Value
A data frame with 7 columns: Domain, Phylum, Class, Order, Family and Specie, describing the taxonmy for each sequence. This data frame can be used as input for phyloseq::tax_table().
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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