Description Usage Arguments Value
View source: R/tagmeFromDada2.R
Assign taxonomy to an input Seqtab variable, exported from Dada2
1 | tagmeFromDada2(seqtab, db = "./", specificity = 0.8, batch = 50000)
|
seqtab |
The seqtab object produced by Dada2. |
db |
The directory containing the downloaded RDS and TXT files corresponding to your amplicon region. The directory name must end with "/". |
specificity |
The Specificity that will determine the threshold score for assignment. |
batch |
The maximum number of sequences to be assigned per batch. Bigger batches demand more memory. |
A table containing the taxonomic assignment and the score to each sequence.
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