Description Usage Arguments Value
View source: R/tagmeFromFasta.R
Assign taxonomy to an input FASTA file
1 | tagmeFromFasta(file, db = "./", specificity = 0.8, batch = 50000)
|
file |
The FASTA file to be classified. It can be a group of ASV, OTU or Unique sequences. |
db |
The directory containing the downloaded RDS and TXT files corresponding to your amplicon region. The directory name must end with "/". |
specificity |
The Specificity that will determine the threshold score for assignment. |
batch |
The maximum number of sequences to be assigned per batch. Bigger batches demand more memory. |
A table containing the taxonomic assignment and the score to each sequence.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.