Files in gacatag/IntEREst
Intron-Exon Retention Estimator
.DS_Store
DESCRIPTION
NAMESPACE
R/DEXSeqInterest.R
R/annotateU12.R
R/applyOverlap.R
R/buildSsTypePwms.R
R/classes.R
R/deseqInterest.R
R/exactTestInterest.R
R/getRepeatTable.R
R/glmInterest.R
R/interest.R
R/interest.sequential.R
R/interestAnalyse.R
R/interestIntExAnalyze.R
R/interestIntExAnalyzeStranded.R
R/interestIntExAnalyzeUnstranded.R
R/interestResultIntEx.R
R/interestSummarise.R
R/intexIndex.R
R/lfc.R
R/matchPwmToReference.R
R/mergeInterestResult.R
R/psi.R
R/qlfInterest.R
R/readInterestResults.R
R/referencePrepare.R
R/subInterestResult.R
R/treatInterest.R
R/u12Boxplot.R
R/u12BoxplotNb.R
R/u12DensityPlot.R
R/u12DensityPlotIntron.R
R/u12Index.R
R/u12NbIndex.R
R/unionRefTr.R
R/updateRowDataCol.R
data/mdsChr22ExObj.rda
data/mdsChr22IntSpObj.rda
data/mdsChr22Obj.rda
data/pwmU12db.rda
data/u12.rda
inst/CITATION
inst/NEWS.Rd
inst/extdata/small_test_SRR1691637_ZRSR2Mut_RHBDD3.bam
inst/extdata/small_test_SRR1691637_ZRSR2Mut_RHBDD3.bam.bai
inst/fig/IntEREst.png
inst/fig/collapseExons.png
inst/scripts/allTophat2Runs.sh
inst/scripts/build_mdsChr22Obj.R
inst/scripts/download-sra.sh
inst/scripts/make_small_test.sh
inst/scripts/readme.txt
inst/scripts/selectCh22fromBam.sh
inst/scripts/sraFilesURL.txt
inst/scripts/sraTofastqConvert.sh
inst/scripts/u12Regions.bed
man/DEXSeqIntEREst.Rd
man/IntEREst-package.Rd
man/addAnnotation.Rd
man/annotateU12.Rd
man/applyOverlap.Rd
man/attributes.Rd
man/boxplot-method.Rd
man/buildSsTypePwms.Rd
man/counts-method.Rd
man/deseqInterest.Rd
man/exactTestInterest.Rd
man/getRepeatTable.Rd
man/glmInterest.Rd
man/interest.Rd
man/interest.sequential.Rd
man/interestResult.Rd
man/interestResultIntEx.Rd
man/intexIndex.Rd
man/lfc.Rd
man/mdsChr22ExObj.Rd
man/mdsChr22IntSpObj.Rd
man/mdsChr22Obj.Rd
man/mergeInterestResult.Rd
man/plot-method.Rd
man/psi.Rd
man/pwmU12db.Rd
man/qlfInterest.Rd
man/readInterestResults.Rd
man/referencePrepare.Rd
man/subInterestResult.Rd
man/treatInterest.Rd
man/u12.Rd
man/u12Boxplot.Rd
man/u12BoxplotNb.Rd
man/u12DensityPlot.Rd
man/u12Index.Rd
man/u12NbIndex.Rd
man/unionRefTr.Rd
man/updateRowDataCol.Rd
vignettes/IntEREst.Rmd
vignettes/ref.bib
