intexIndex: Extract index of intron or exon rows

In gacatag/IntEREst: Intron-Exon Retention Estimator

Extract index of intron or exon rows

Description

Extract row numbers where introns (or exons dependant on user's request) are located in an object of type SummarizedExperiment.

Usage

intexIndex(x, intExCol="int_ex", what="intron")

Arguments

x	Object of type SummarizedExperiment.
intExCol	Column name (or number) that represents whether each row is "intron" or "exon" in rowData of x.
what	A character string that defines whether the index for the introns or exons should be returned. Accepts either "exon" or "intron" (default) as values.

Value

A numeric vector which includes the index of the introns/exons.

Author(s)

Ali Oghabian

See Also

u12NbIndex

Examples

# Show the few first index of rows that represent the introns
head(intexIndex(mdsChr22Obj, what="intron"))

gacatag/IntEREst documentation built on July 29, 2024, 1:12 a.m.