u12Index: Extract index of U12 introns rows

View source: R/u12Index.R

u12IndexR Documentation

Extract index of U12 introns rows

Description

Extract row numbers of U12 introns in an object of class SummarizedExperiment.

Usage

u12Index(x, intExCol="int_ex", intTypeCol="int_type", intronExon="intron")

Arguments

x

Object of type SummarizedExperiment.

intExCol

Column name (or number) that represents whether each row of x assays is "intron" or "exon".

intTypeCol

Column name (or number) that represents what type of intron each row of x assays represents.

intronExon

Whether extract U12 type introns (set intronExon="intron") or exon-exon junction (set intronExon="exon") flanking U12 introns.

Value

A numeric vector which includes the index of U12 introns.

Author(s)

Ali Oghabian

See Also

u12NbIndex

Examples


head(u12Index(mdsChr22Obj, intTypeCol="intron_type"))


gacatag/IntEREst documentation built on July 29, 2024, 1:12 a.m.