p1_modify_count_matrix: p1 modifying count matrix modifies count matrix

In galelab/GaleGEAnalysis: What the Package Does (One Line, Title Case)

Description

This function allows remove samples from count matrix if they are not to be included in downstream gene expression analysis

Usage

p1_modify_count_matrix(
  countfile,
  targetfile,
  samples_to_remove_count_matrix = FALSE
)

Arguments

countfile	raw counts table (generally output by htseq).
targetfile	target file.
samples_to_remove_count_matrix	text file (no header) or r list of samples to remove (defualt is FALSE)

Examples

p1_modify_count_matrix(count_file.txt, target_file.csv, samples_to_remove_count_matrix=c(sample1,sample2))

galelab/GaleGEAnalysis documentation built on May 18, 2020, 7:32 a.m.