Files in gaolong/arvin
Annotation of Regulatory Variants using Integrated Networks

.Rbuildignore
.gitignore
ARVIN_quick_start.docx
DESCRIPTION
NAMESPACE
R/ModSearch.R R/NetConfig.R R/NetworkFeatureCalculation.R R/TFBindingDisruption.R R/Test.R R/TrainAndPred.R
arvin.Rproj
arvinUserGuide.Rmd arvinUserGuide.pdf
example_input/EP_Interactions.Treg.bed
example_input/EdgeFile.txt
example_input/Enhancers.Treg.txt
example_input/NodeFile.txt
example_input/funseq_matrix.txt
example_input/funseq_output.bed
example_input/gwava_matrix.txt
example_input/gwava_output.csv
example_input/snp_labels.txt
example_input/snp_pval.txt
example_input/snps.bed
man/.Rapp.history
man/BetFeature.Rd man/CloseFeature.Rd man/ModuleFeature.Rd man/NetFeature.Rd man/PageFeature.Rd man/WDFeature.Rd man/getTFname.Rd man/get_disruption_p_value.Rd man/makeNet.Rd man/module_search_ind.Rd man/predMod.Rd man/snpFeature.Rd man/trainMod.Rd preprocessing/calculate_empirical_p_values.R
preprocessing/combine_enhancer_and_ep_scores.pl
preprocessing/disruption_calculate_log_odds_ratio.pl
preprocessing/disruption_snp_get_surrounding_regions.pl
preprocessing/merge_gwava_and_funseq_features.pl
preprocessing/overlap_snps_with_ep.pl
preprocessing/process_funseq_output.pl
process_features.sh
run_example_input.sh
source/ARVIN_0.1.tar.gz
gaolong/arvin documentation built on Dec. 14, 2017, 11:53 a.m.