Files in gaolong/arvin
Annotation of Regulatory Variants using Integrated Networks
.Rbuildignore
.gitignore
ARVIN_Quick_Start.docx
DESCRIPTION
NAMESPACE
R/ModSearch.R
R/NetConfig.R
R/NetworkFeatureCalculation.R
R/TFBindingDisruption.R
R/Test.R
R/TrainAndPred.R
arvin.Rproj
arvinUserGuide.Rmd
arvinUserGuide.pdf
example_1/EP_Interactions.Treg.bed
example_1/EdgeFile.txt
example_1/Enhancers.Treg.txt
example_1/NodeFile.txt
example_1/funseq_matrix.txt
example_1/gwava_matrix.txt
example_1/snp_labels.txt
example_1/snp_pval.txt
example_1/snps.bed
example_2/input/EP_AUTOIMMUNE.bed
example_2/input/funseq_features_file.bed
example_2/input/gwava_features_file.tsv
example_2/input/input_snps_file.bed
example_2/run_example_2.sh
man/.Rapp.history
man/BetFeature.Rd
man/CloseFeature.Rd
man/ModuleFeature.Rd
man/NetFeature.Rd
man/PageFeature.Rd
man/WDFeature.Rd
man/getTFname.Rd
man/get_disruption_p_value.Rd
man/makeNet.Rd
man/module_search_ind.Rd
man/predMod.Rd
man/snpFeature.Rd
man/trainMod.Rd
perl_libraries/List-MoreUtils-0.33.tar.gz
perl_libraries/List-MoreUtils-0.33/Changes
perl_libraries/List-MoreUtils-0.33/LICENSE
perl_libraries/List-MoreUtils-0.33/MANIFEST
perl_libraries/List-MoreUtils-0.33/META.yml
perl_libraries/List-MoreUtils-0.33/Makefile.PL
perl_libraries/List-MoreUtils-0.33/MoreUtils.xs
perl_libraries/List-MoreUtils-0.33/README
perl_libraries/List-MoreUtils-0.33/dhash.h
perl_libraries/List-MoreUtils-0.33/lib/List/MoreUtils.pm
perl_libraries/List-MoreUtils-0.33/multicall.h
perl_libraries/List-MoreUtils-0.33/sanexs.c
perl_libraries/List-MoreUtils-0.33/t/01_compile.t
perl_libraries/List-MoreUtils-0.33/t/02_perl.t
perl_libraries/List-MoreUtils-0.33/t/03_xs.t
perl_libraries/List-MoreUtils-0.33/t/lib/Test.pm
perl_libraries/List-MoreUtils-0.33/xt/meta.t
perl_libraries/List-MoreUtils-0.33/xt/pmv.t
perl_libraries/List-MoreUtils-0.33/xt/pod.t
perl_libraries/List/MoreUtils.pm
perl_libraries/Math-Round-0.07.tar.gz
perl_libraries/Math/Changes
perl_libraries/Math/MANIFEST
perl_libraries/Math/META.yml
perl_libraries/Math/Makefile
perl_libraries/Math/Makefile.PL
perl_libraries/Math/README
perl_libraries/Math/Round.pm
perl_libraries/Math/test.pl
scripts/arvin_wrapper.sh
scripts/convert_gwava_web_to_gwava_cmd.pl
scripts/disruption_add_missing_snps.pl
scripts/disruption_calculate_empirical_p_values.R
scripts/disruption_calculate_log_odds_ratio.pl
scripts/disruption_snp_get_surrounding_regions.pl
scripts/generate_network_input.py
scripts/merge_gwava_and_funseq_features.cmd.pl
scripts/normalize_dge.R
scripts/overlap_snps_with_ep.pl
scripts/process_ep_scores.pl
scripts/process_funseq_output.pl
scripts/run_scoring.R
source/ARVIN_0.1.tar.gz
