Annotation of Regulatory Variants using Integrated Networks

BetFeature | Compute betweenness centrality |

CloseFeature | Compute closeness centrality |

get_disruption_p_value | Calculate transcription factor disruption p values for the... |

getTFname | Extract TF name from the file name which is separated from... |

makeNet | Generate a graph object for input network |

ModuleFeature | Compute module scores |

module_search_ind | Search modules from a list of seeds/nodes |

NetFeature | Compute network-based features needed for risk variant... |

PageFeature | Compute pagerank centrality |

predMod | Compute prediction score |

snpFeature | Compute TF binding disruption score |

trainMod | Train a classifier |

WDFeature | Compute weighted degree |

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