visEngine: Visualization engine inspired by kinship2

In gavin-k-lee/visPed: Visualizes Pedigrees

Description

Visualization engine inspired by kinship2

Usage

visEngine(
  x,
  annot,
  feature.name = NULL,
  which.proband = NULL,
  add.ids = x$id[x$add == 1],
  id = x$id,
  status = x$status,
  affected = x$affected,
  cex = 1,
  col = 1,
  symbolsize = 1,
  branch = 0.6,
  packed = TRUE,
  align = c(1.5, 2),
  width = 10,
  density = c(-1, 35, 65, 20),
  main_title = "Your Pedigree",
  mar = c(4.1, 1, 4.1, 1),
  angle = c(90, 65, 40, 0),
  keep.par = FALSE,
  subregion,
  pconnect = 0.5
)

Arguments

x	a pedigree data.frame
annot	the annotation string
feature.name	the names of the features
which.proband	which ID is the proband
add.ids	which additional IDs to add
id	ID column from x pedigree
status	alive or dead status
affected	affected or unaffected column
cex	spacing
col	column number, either 1 or the number of individuals
symbolsize	symbol size
branch	branch size
packed	boolean to pack the pedigree plot
align	align parameters
width	width parameter
density	density parameters
main_title	title on plot
mar	legend margins
angle	angle of labels
keep.par	boolean to keep or discard old graphics parameters
subregion	boolean whether or not to split plot into subregions
pconnect	controls parent connections

gavin-k-lee/visPed documentation built on July 22, 2021, 1:09 p.m.