Files in gdorum/relMix
Relationship Inference for DNA Mixtures
.Rbuildignore
DESCRIPTION
NAMESPACE
NEWS.md
R/allGenos.R
R/checkFrequenciesFile.R
R/checkMixtureFile.R
R/checkPedigreeFile.R
R/checkReferenceFile.R
R/createDatamatrix.R
R/db.R
R/db2.R
R/generateMix.R
R/globals.R
R/mixLikDrop.R
R/relMix.R
R/relMixGUI.R
R/util.R
README.Rmd
README.md
RelMix.Rproj
data/db.RData
data/db2.RData
inst/extdata/custom_pedigree_maternity_duo.ped
inst/extdata/custom_pedigree_unrelated_duo.ped
inst/extdata/freqsSilent.txt
inst/extdata/frequencies22Markers.txt
inst/extdata/frequencies_MH.txt
inst/extdata/mixture.txt
inst/extdata/mixture_MH.txt
inst/extdata/mixture_ex1_vignette.txt
inst/extdata/mixture_silent_ex.txt
inst/extdata/references.txt
inst/extdata/references_MH.txt
inst/extdata/references_ex1_vignette.txt
inst/extdata/references_silent.txt
inst/extdata/testdata/corrupt/freq-largeEx-comma-decimal.txt
inst/extdata/testdata/corrupt/freq-largeEx-duplicate-markers.txt
inst/extdata/testdata/corrupt/freq-largeEx-non-numeric-frequencies.txt
inst/extdata/testdata/corrupt/freq-smallEx-duplicate-markers.txt
inst/extdata/testdata/corrupt/freq-smallEx-non-numeric-frequencies.txt
inst/extdata/testdata/corrupt/mix-largeEx-invalid-table-structure.txt
inst/extdata/testdata/corrupt/mix-largeEx-sample-name-mistaken.txt
inst/extdata/testdata/corrupt/ref-largeEx-unknown-kinship.txt
inst/extdata/testdata/corrupt/ref-largeEx-with-tp0x.txt
inst/extdata/testdata/fixable/freq-largeEx-bad-header.txt
inst/extdata/testdata/fixable/freq-smallEx-bad-header.txt
inst/extdata/testdata/fixable/ref-largeEx-wrong-headers.txt
inst/extdata/testdata/valid/custom_pedigree_maternity_duo.ped
inst/extdata/testdata/valid/custom_pedigree_unrelated_duo.ped
inst/extdata/testdata/valid/freq-largeEx.txt
inst/extdata/testdata/valid/freq-microhaplotypes.txt
inst/extdata/testdata/valid/freq-smallEx.txt
inst/extdata/testdata/valid/freqs-duo-custom-pedigree.txt
inst/extdata/testdata/valid/mix-duo-custom-pedigree.txt
inst/extdata/testdata/valid/mix-largeEx.txt
inst/extdata/testdata/valid/mix-microhaplotypes.txt
inst/extdata/testdata/valid/mix-smallEx.txt
inst/extdata/testdata/valid/ref-duo-custom-pedigree.txt
inst/extdata/testdata/valid/ref-largeEx.txt
inst/extdata/testdata/valid/ref-microhaplotypes.txt
inst/extdata/testdata/valid/ref-smallEx.txt
man/allGenos.Rd
man/checkFrequenciesFile.Rd
man/checkMixtureFile.Rd
man/checkPedigreeFile.Rd
man/checkReferenceFile.Rd
man/createDatamatrix.Rd
man/db.Rd
man/db2.Rd
man/generateMix.Rd
man/mixLikDrop.Rd
man/relMix.Rd
man/relMixGUI.Rd
vignettes/contributors_ex1.png
vignettes/contributors_ex2.png
vignettes/custom_ped_ex2.png
vignettes/custom_pedigree_maternity_duo.ped
vignettes/custom_pedigree_unrelated_duo.ped
vignettes/database_crop.png
vignettes/database_options.png
vignettes/database_options_ex2.png
vignettes/dropout_ex1.png
vignettes/dropout_ex2.png
vignettes/freqsSilent.txt
vignettes/frequencies22Markers.txt
vignettes/mixture.txt
vignettes/mixture_silent_ex.txt
vignettes/mutations_ex2.png
vignettes/pedigrees_ex1.png
vignettes/references.txt
vignettes/references_silent.txt
vignettes/relMix.R
vignettes/relMix.Rmd
vignettes/relMix.html
vignettes/relMix_screenshot.png
vignettes/results_ex1.png
vignettes/results_ex2.png
vignettes/scaling_ex2.png
