demog.sample.pars<-function(nruns,
var.zeta,
coexp.prior,
buffer,
Ne.prior,
NeA.prior,
time.prior,
gene.prior){
MS.par<-list(NULL)
pop.par<-list(NULL)
coexp.par<-matrix(nrow=1,ncol=4)
nspecies<-1
MS.par[[1]]<-matrix(nrow=1,ncol=4)
pop.par[[1]]<-matrix(nrow=1,ncol=4)
ms.par<-NULL
Ne <- runif(1, Ne.prior[1,3], Ne.prior[1,4])
e.t<-runif(1, time.prior[1,3], time.prior[1,4])
Ne.EXP.t <- e.t/time.prior[1,5] #corrects by generations
theta.A.ratio <- runif(1, NeA.prior[1], NeA.prior[2])# thetaA (NeA) ratio
NeA <- Ne*theta.A.ratio
mi <- do.call(as.character(gene.prior[1,2]),args=list(1,gene.prior[1,3],gene.prior[1,4]),quote=F)
while(mi<0){
mi <- do.call(as.character(gene.prior[1,2]),args=list(1,gene.prior[1,3],gene.prior[1,4]),quote=F)
}
po.par<-c(Ne,e.t,NeA,mi)
Ne <- Ne*gene.prior[1,7]
theta=4*Ne*mi*gene.prior[1,5]
scalar=4*Ne
EXP.time=Ne.EXP.t/scalar
g.rate=-log(NeA/Ne)/Ne.EXP.t
ms.par<-cbind(theta,EXP.time,theta.A.ratio,g.rate)
MS.par[[1]][1,]<-ms.par
pop.par[[1]][1,]<-po.par
pars<-list(NULL,NULL,NULL)
names(pars)<-c("MS.par","pop.par")
pars$MS.par<-MS.par
pars$pop.par<-po.par
return(pars)
}
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