GradientDescent: Gradient Descent Script

In genehackers/optizyme: Optizyme

Description

Function that takes the number of enzymes allowed to vary, initial guess for the concentration of each of the enzymes (inputted as a vector), number of steps to be performed, and the multiple used to determine the step size of gradient descent. Recommended that the multiple be below 1, however the algorithm will adjust the step size after each iteration.

Usage

GradientDescent(
  NumberOfEnzymes,
  InitialGuess,
  NumberOfSteps,
  GDdtMultiple,
  GDdtCutoff
)

Arguments

NumberOfEnzymes	the integer number of enzymes used in the pathway
InitialGuess	a vector of inital guess values
NumberOfSteps	an integer
GDdtMultiple	a float number

Value

a vector and the number of steps to get there

genehackers/optizyme documentation built on Oct. 24, 2020, 9 a.m.