API for geneprophet/BSDMR
a region-based method for quantitating the conservation and divergence of methylation patterns between species by high order features
| Global functions | |
|---|---|
| .compute_similarity | Source code |
| .constructGRanges | Source code |
| .create_met_region | Source code |
| .do_centre_loc | Source code |
| .gg_theme | Source code |
| .infer_profiles_vb_bpr | Source code |
| .infer_profiles_vb_bpr.default | Source code |
| .infer_profiles_vb_bpr.list | Source code |
| .infer_profiles_vb_bpr.matrix | Source code |
| .minmax_scaling | Source code |
| .onLoad | Source code |
| .parallel_cores | Source code |
| .parallel_find_region | Source code |
| .predictive_infer_profile | Source code |
| .rbf_basis | Source code |
| BSDMR | Man page |
| BSDMR-package | Man page |
| adjusted_cosine_similarity | Man page Source code |
| basis | Man page |
| betareg_gradient | Man page Source code |
| betareg_log_likelihood | Man page Source code |
| bpr_gradient | Man page Source code |
| bpr_log_likelihood | Man page Source code |
| change_genomic_coordinate | Man page Source code |
| cluster_sites_to_region | Man page Source code |
| create_basis | Man page |
| create_basis_function | Man page |
| create_rbf_object | Man page Source code |
| create_region_obj | Man page |
| create_region_object | Man page Source code |
| des_mat | Man page |
| des_matrix | Man page |
| design_matrix | Man page Source code |
| design_matrix.default | Man page Source code |
| design_matrix.rbf | Man page Source code |
| designmatrix | Man page |
| human_anno | Man page |
| human_fit_mean | Man page |
| human_fit_profiles | Man page |
| human_met | Man page |
| human_obj | Man page |
| human_region | Man page |
| infer_profile_vb | Man page |
| infer_profiles_vb | Man page Source code |
| inference_vb | Man page |
| model_log_likelihood | Man page |
| mouse_anno | Man page |
| mouse_fit_mean | Man page |
| mouse_fit_profiles | Man page |
| mouse_met | Man page |
| mouse_obj | Man page |
| mouse_region | Man page |
| plot_infer_profiles | Man page Source code |
| rcpp_hello_world | Man page Source code |
| read_annotation | Man page Source code |
| read_methylation_report | Man page Source code |
| similarity | Man page |
| sum_weighted_betareg_grad | Man page Source code |
| sum_weighted_betareg_lik | Man page Source code |
| sum_weighted_bpr_grad | Man page Source code |
| sum_weighted_bpr_lik | Man page Source code |
| timesTwo | Man page Source code |
