create_basis: Create basis objects

In geneprophet/BSDMR: a region-based method for quantitating the conservation and divergence of methylation patterns between species by high order features

Description

These functions create different basis objects, which can be used as input to complex functions in order to perform computations depending on the class of the basis function.

Usage

create_rbf_object(
  M = 8,
  gamma = NULL,
  mus = NULL,
  eq_spaced_mus = TRUE,
  whole_region = TRUE
)

Arguments

M	The number of the basis functions. In case of Fourier basis, this number should be even, since we need to have pairs of sines and cosines and the constant term is added by default.
gamma	Inverse width of radial basis function.
mus	Optional centers of the RBF.
eq_spaced_mus	Logical, if TRUE, equally spaced centers are created, otherwise centers are created using kmeans algorithm.
whole_region	Logical, indicating if the centers will be evaluated equally spaced on the whole region, or between the min and max of the observation values.

Value

A basis object of class 'rbf'.

Author(s)

Hongen Kang [e-mail]

See Also

design_matrix

Examples

human_basis_profile <- create_rbf_object(M = 8)
human_basis_mean <- create_rbf_object(M = 0)
#---------------------------------

geneprophet/BSDMR documentation built on March 3, 2021, 5:50 a.m.