mouse_fit_profiles: a example out of 'infer_profiles_vb '

In geneprophet/BSDMR: a region-based method for quantitating the conservation and divergence of methylation patterns between species by high order features

Description

mouse_basis_profile <- create_rbf_object(M = 8) mouse_obj <- create_region_object(mouse_met, mouse_region) mouse_fit_profiles <- infer_profiles_vb(X = mouse_obj$met, model = "binomial", basis = mouse_basis_profile, is_parallel = TRUE, vb_max_iter = 100)

Usage

mouse_fit_profiles

Format

An object of class infer_profiles_vb_"obs_model" with the following elements:

• W: An Nx(M+1) matrix with the optimized parameter values. Each row of the matrix corresponds to each element of the list X; if X is a matrix, then N = 1. The columns are of the same length as the parameter vector w (i.e. number of basis functions).

• W_Sigma: A list with covariance matrices for each element row in W.

• basis: The basis object.

• nll_feat: NLL fit feature.

• rmse_feat: RMSE fit feature.

• coverage_feat: CpG coverage feature.

• lb_feat: Lower Bound feature.

Value

infer_profiles_vb

See Also

infer_profiles_vb

geneprophet/BSDMR documentation built on March 3, 2021, 5:50 a.m.