mouse_region: a example output of 'change_genomic_coordinate '
In geneprophet/BSDMR: a region-based method for quantitating the conservation and divergence of methylation patterns between species by high order features
Description
Usage
Format
Value
See Also
Description
filePath <- system.file("extdata", "hg38ToMm10.over.chain", package = "BSDMR")
mouse_region <- change_genomic_coordinate(human_region,filePath,mouse_anno)
Usage
1
Format
A GRanges object.
The GRanges object contains three additional metadata columns:
-
id: EnsemblID or liftOver FAILED,indicates the region mapping failed between seocies
-
center: the center of the region,(strat+end)/2, or NA if liftOver FAILED
-
annotation:the annotation of the region, it can be promoter,downstream,gene,UTR...
or the reason of liftOver FAILED.
Value
annotation data
See Also
geneprophet/BSDMR documentation built on March 3, 2021, 5:50 a.m.
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Description Usage Format Value See Also
Description
filePath <- system.file("extdata", "hg38ToMm10.over.chain", package = "BSDMR")
mouse_region <- change_genomic_coordinate(human_region,filePath,mouse_anno)
Usage
1 |
Format
A GRanges object.
The GRanges object contains three additional metadata columns:
-
id: EnsemblID or liftOver FAILED,indicates the region mapping failed between seocies -
center: the center of the region,(strat+end)/2, or NA if liftOver FAILED -
annotation:the annotation of the region, it can be promoter,downstream,gene,UTR... or the reason of liftOver FAILED.
Value
annotation data
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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