Files in geneprophet/BSDMR
a region-based method for quantitating the conservation and divergence of methylation patterns between species by high order features
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/BSDMR-package.R
R/RcppExports.R
R/change_genomic_coordinate.R
R/cluster_sites_to_region.R
R/compute_similarity.R
R/create_region_object.R
R/data.R
R/infer_profiles.R
R/read_data.R
R/real_data_processing.R
R/simulated_process.R
R/utils.R
R/visualization.R
README.Rmd
README.md
data-raw/DATASET.R
data/human_anno.rda
data/human_fit_mean.rda
data/human_fit_profiles.rda
data/human_met.rda
data/human_obj.rda
data/human_region.rda
data/mouse_anno.rda
data/mouse_fit_mean.rda
data/mouse_fit_profiles.rda
data/mouse_met.rda
data/mouse_obj.rda
data/mouse_region.rda
data/similarity.rda
inst/extdata/example_human_CpG_report.txt
inst/extdata/example_human_chr22_CpG_report.txt
inst/extdata/example_human_chr22_annotation.txt
inst/extdata/example_mouse_CpG_report.txt
inst/extdata/example_mouse_chr15_CpG_report.txt
inst/extdata/example_mouse_chr15_annotation.txt
inst/extdata/human_chr22_CpG_islands.txt
inst/extdata/human_chr22_annotation.txt
inst/extdata/human_simulated_1.txt
inst/extdata/human_simulated_2.txt
inst/extdata/human_simulated_3.txt
inst/extdata/mouse_chr15_CpG_islands.txt
inst/extdata/mouse_chr15_annotation.txt
inst/extdata/mouse_simulated_1.txt
inst/extdata/mouse_simulated_2.txt
inst/extdata/mouse_simulated_3.txt
inst/extdata/selected_human_60_CpG_islands.txt
inst/extdata/selected_mouse_60_CpG_islands.txt
man/BSDMR.Rd
man/adjusted_cosine_similarity.Rd
man/change_genomic_coordinate.Rd
man/cluster_sites_to_region.Rd
man/create_basis.Rd
man/create_region_object.Rd
man/design_matrix.Rd
man/figures/README-example-1.png
man/figures/README-example-2.png
man/human_anno.Rd
man/human_fit_mean.Rd
man/human_fit_profiles.Rd
man/human_met.Rd
man/human_obj.Rd
man/human_region.Rd
man/infer_profiles_vb.Rd
man/model_log_likelihood.Rd
man/mouse_anno.Rd
man/mouse_fit_mean.Rd
man/mouse_fit_profiles.Rd
man/mouse_met.Rd
man/mouse_obj.Rd
man/mouse_region.Rd
man/plot_infer_profiles.Rd
man/rcpp_hello_world.Rd
man/read_annotation.Rd
man/read_methylation_report.Rd
man/similarity.Rd
man/timesTwo.Rd
src/.gitignore
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/model_likelihood.cpp
src/rcpp_hello_world.cpp
src/timesTwo.cpp
