Man pages for geneprophet/BSDMR
a region-based method for quantitating the conservation and divergence of methylation patterns between species by high order features
| adjusted_cosine_similarity | compute the similarity of queryProfiles and subjectProfiles |
| BSDMR | BSDMR: a region-based method for quantitating the... |
| change_genomic_coordinate | change the genomic coordinate system of inputRegion by... |
| cluster_sites_to_region | cluster sites to region |
| create_basis | Create basis objects |
| create_region_object | Create genomic region data |
| design_matrix | Generic function for creating design matrices |
| human_anno | a example output of 'read_annotation' |
| human_fit_mean | a example out of 'infer_profiles_vb ' |
| human_fit_profiles | a example out of 'infer_profiles_vb ' |
| human_met | a example output of 'read_methylation_report' |
| human_obj | a example output of 'create_region_object ' |
| human_region | a example output of 'cluster_sites_to_region ' |
| infer_profiles_vb | Infer methylation profiles using VB |
| model_log_likelihood | model_log_likelihood |
| mouse_anno | a example output of 'read_annotation' |
| mouse_fit_mean | a example out of 'infer_profiles_vb ' |
| mouse_fit_profiles | a example out of 'infer_profiles_vb ' |
| mouse_met | a example output of 'read_methylation_report' |
| mouse_obj | a example output of 'create_region_object ' |
| mouse_region | a example output of 'change_genomic_coordinate ' |
| plot_infer_profiles | Plot inferred methylation profiles across a region |
| rcpp_hello_world | Simple function using Rcpp |
| read_annotation | Read a annotation file |
| read_methylation_report | Read a methylation report file |
| similarity | a example output of 'adjusted_cosine_similarity ' |
| timesTwo | timesTwo |
