Man pages for genesofeve/ProjectR
Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering
| alluvialMat | alluvialMat |
| AP.RNAseq6l3c3t | CoGAPS patterns and genes weights for p.RNAseq6l3c3t |
| aucMat | aucMat |
| bonferroniCorrectedDifferences | bonferroniCorrectedDifferences |
| cluster2pattern-class | cluster2pattern |
| cluster2pattern-methods | Generic cluster2pattern function |
| clusterPlotR-methods | Generic clusterPlotR function |
| correlateR | correlateR |
| correlateR-class | correlateR |
| cr_microglial | CogapsResult object for microglial_counts |
| CR.RNAseq6l3c3t | CogapsResult object for p.RNAseq6l3c3t |
| geneMatchR | Generic geneMatchR function |
| getTSNE | getTSNE |
| getUMAP | getUMAP |
| glial_counts | log-normalized count data from astrocytes and... |
| initialize-cluster2pattern-method | Constructor for cluster2pattern |
| initialize-correlateR-method | Constructor for correlateR |
| initialize-rotatoR-method | Constructor for rotatoR |
| intersectoR-methods | Generic intersectoR function |
| map.ESepiGen4c1l | RNAseqing and ChIPSeq of matched genes in differentiated... |
| map.RNAseq6l3c3t | RNAseqing from human 3 iPS & 3 ES cell lines in 3... |
| microglial_counts | log-normalized count data from microglial cells in the p6... |
| multivariateAnalysisR | Generic multivariateAnalysisR function |
| multivariateAnalysisR_seurat_test | Truncated Seurat Object with latent space projection done to... |
| pd.ESepiGen4c1l | RNAseqing and ChIPSeq of matched genes in differentiated... |
| pd.RNAseq6l3c3t | RNAseqing from human 3 iPS & 3 ES cell lines in 3... |
| pdVolcano | pdVolcano |
| p.ESepiGen4c1l | RNAseqing and ChIPSeq of matched genes in differentiated... |
| plotConfidenceIntervals | plotConfidenceIntervals |
| plotVolcano | plotVolcano |
| p.RNAseq6l3c3t | RNAseqing from human 3 iPS & 3 ES cell lines in 3... |
| projectionDriveR | projectionDriveR |
| projectR-methods | Generic projectR function |
| retinal_patterns | CoGAPS patterns learned from the developing mouse retina. |
| rotatoR | rotatoR |
| rotatoR-class | rotatoR |
