clusterPlotR-methods: Generic clusterPlotR function

In genesofeve/ProjectR: Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering

Generic clusterPlotR function

Description

plotting function for clustering objects

Usage

clusterPlotR(cData, cls, x, NC, ...)

## S4 method for signature 'ANY,kmeans'
clusterPlotR(
  cData = NA,
  cls = NA,
  x = NA,
  NC = NA,
  annoIndx = NA,
  label = NULL,
  ...
)

## S4 method for signature 'ANY,hclust'
clusterPlotR(
  cData = NA,
  cls = NA,
  x = NA,
  NC = NA,
  annoIndx = NA,
  label = NULL,
  ...
)

Arguments

cData	data used to get clusters
cls	a cluster (kmeans or hclust) object
x	a vector of length equal to number of samples to use for plotting
NC	vector of integers indicating which clusters to use
...	additional parameters for plotting. ex. pch,cex,col,labels, xlab, etc.
annoIndx	vector indexing into subsets for plotting
label	character vector to use for plotting text, defaults is NULL

Value

A plot of the mean behavior for each cluster

Examples

## Not run: 
 k.RNAseq6l3c3t<-kmeans(p.RNAseq6l3c3t,22)
 clusterPlotR(p.RNAseq6l3c3t, cls=k.RNAseq6l3c3t,NC=1,x=pd.RNAseq6l3c3t$days,
col=pd.RNAseq6l3c3t$color)

## End(Not run)

genesofeve/ProjectR documentation built on April 18, 2024, 6:06 p.m.